Variant report

Variant	rs16885578
Chromosome Location	chr6:54482631-54482632
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1039699	0.93[ASN][1000 genomes]
rs10484986	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12333250	1.00[ASN][1000 genomes]
rs12333325	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885559	0.81[ASN][1000 genomes]
rs16885565	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885575	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17443543	0.93[ASN][1000 genomes]
rs17448241	0.88[CHD][hapmap]
rs17540495	1.00[ASN][1000 genomes]
rs17540835	0.93[ASN][1000 genomes]
rs17545325	0.88[CHD][hapmap]
rs56210129	1.00[ASN][1000 genomes]
rs60428561	1.00[ASN][1000 genomes]
rs62412294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759564	1.00[ASN][1000 genomes]
rs7771064	1.00[ASN][1000 genomes]
rs7771536	1.00[ASN][1000 genomes]
rs7771554	1.00[ASN][1000 genomes]
rs9464102	1.00[ASN][1000 genomes]
rs9464104	1.00[ASN][1000 genomes]
rs9464105	1.00[ASN][1000 genomes]
rs9464106	1.00[ASN][1000 genomes]
rs9464108	1.00[ASN][1000 genomes]
rs9464109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474920	1.00[ASN][1000 genomes]
rs9474921	1.00[ASN][1000 genomes]
rs9474922	1.00[ASN][1000 genomes]
rs9474923	1.00[ASN][1000 genomes]
rs9474924	1.00[ASN][1000 genomes]
rs9474926	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54481800-54483600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54482000-54483200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:54482000-54483200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:54482000-54483400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:54482200-54483000	Enhancers	HUVEC	blood vessel
7	chr6:54482200-54483000	Enhancers	NHDF-Ad	bronchial
8	chr6:54482200-54483200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:54482200-54483200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:54482200-54483200	Enhancers	NH-A	brain
11	chr6:54482200-54483200	Enhancers	NHLF	lung
12	chr6:54482200-54483600	Enhancers	Osteobl	bone
13	chr6:54482200-54483800	Enhancers	Fetal Intestine Small	intestine
14	chr6:54482400-54482800	Enhancers	Colon Smooth Muscle	Colon
15	chr6:54482400-54482800	Enhancers	HepG2	liver
16	chr6:54482400-54483000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:54482400-54483000	Enhancers	HSMMtube	muscle
18	chr6:54482400-54483800	Enhancers	HSMM	muscle
19	chr6:54482600-54483000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:54482600-54483000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links