Variant report

Variant	rs9464109
Chromosome Location	chr6:54481636-54481637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1039699	0.93[ASN][1000 genomes]
rs10484986	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12333250	1.00[ASN][1000 genomes]
rs12333325	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885559	0.81[ASN][1000 genomes]
rs16885565	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885575	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443543	0.93[ASN][1000 genomes]
rs17540495	1.00[ASN][1000 genomes]
rs17540835	0.93[ASN][1000 genomes]
rs56210129	1.00[ASN][1000 genomes]
rs60428561	1.00[ASN][1000 genomes]
rs62412294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759564	1.00[ASN][1000 genomes]
rs7771064	1.00[ASN][1000 genomes]
rs7771536	1.00[ASN][1000 genomes]
rs7771554	1.00[ASN][1000 genomes]
rs9464102	1.00[ASN][1000 genomes]
rs9464104	1.00[ASN][1000 genomes]
rs9464105	1.00[ASN][1000 genomes]
rs9464106	1.00[ASN][1000 genomes]
rs9464108	1.00[ASN][1000 genomes]
rs9474920	1.00[ASN][1000 genomes]
rs9474921	1.00[ASN][1000 genomes]
rs9474922	1.00[ASN][1000 genomes]
rs9474923	1.00[ASN][1000 genomes]
rs9474924	1.00[ASN][1000 genomes]
rs9474926	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474935	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54465800-54481800	Weak transcription	Aorta	Aorta
2	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:54480200-54482400	Weak transcription	HSMM	muscle
4	chr6:54480400-54482400	Weak transcription	HSMMtube	muscle

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