The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs562970463
Chromosome Location
chr5:59600024-59600025
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:2)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr5:59599741-59600042
A549
lung:
n/a
n/a
2
CEBPB
chr5:59599732-59600028
IMR90
lung:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
RNU6-806P
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1025856
chr5:59188419-59928852
Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
20 gene(s)
inside rSNPs
diseases
2
nsv830316
chr5:59480269-59689829
Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive region
3 gene(s)
inside rSNPs
diseases
3
esv3421025
chr5:59598195-59602393
Inactive region
TF binding region
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links