Variant report

Variant	rs562970754
Chromosome Location	chr3:142204986-142204987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv877558	chr3:142123841-142331360	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv877559	chr3:142132749-142331360	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv877561	chr3:142152925-142331360	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv528954	chr3:142164017-142219542	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142167400-142234600	Weak transcription	Psoas Muscle	Psoas
2	chr3:142198400-142214400	Weak transcription	Stomach Mucosa	stomach
3	chr3:142199200-142216000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:142200000-142215200	Weak transcription	NHLF	lung
5	chr3:142200000-142223200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:142200200-142206400	Weak transcription	HepG2	liver
7	chr3:142200400-142243800	Weak transcription	Fetal Heart	heart
8	chr3:142200600-142205400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:142200600-142205400	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:142200600-142208200	Weak transcription	NHDF-Ad	bronchial
11	chr3:142200600-142210000	Weak transcription	HUVEC	blood vessel
12	chr3:142200600-142271800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:142200800-142206400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:142200800-142213400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:142200800-142214000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:142200800-142219800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:142201000-142206600	Weak transcription	NH-A	brain
18	chr3:142201000-142218200	Strong transcription	Adipose Nuclei	Adipose
19	chr3:142201000-142218600	Strong transcription	Fetal Thymus	thymus
20	chr3:142201000-142239600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:142201000-142240600	Weak transcription	Fetal Brain Male	brain
22	chr3:142201200-142210000	Weak transcription	Brain Germinal Matrix	brain
23	chr3:142201200-142218000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:142201200-142226800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:142201400-142217000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:142201600-142205000	Strong transcription	Primary B cells from cord blood	blood
27	chr3:142201600-142205000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:142201600-142216000	Strong transcription	Primary T cells from cord blood	blood
29	chr3:142201600-142216000	Strong transcription	GM12878-XiMat	blood
30	chr3:142201600-142218600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:142201600-142219000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:142201600-142273200	Weak transcription	Esophagus	oesophagus
33	chr3:142201800-142205400	Strong transcription	Primary hematopoietic stem cells	blood
34	chr3:142201800-142208400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:142201800-142218000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr3:142201800-142240600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:142201800-142243600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:142201800-142273800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr3:142202000-142221200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr3:142202000-142223800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:142202000-142231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:142202000-142235200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr3:142202000-142239600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr3:142202200-142206400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:142202200-142218000	Strong transcription	Fetal Intestine Large	intestine
46	chr3:142202200-142218600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:142202200-142240200	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:142202400-142205000	Strong transcription	Fetal Muscle Leg	muscle
49	chr3:142202400-142205600	Strong transcription	Liver	Liver
50	chr3:142202400-142207600	Strong transcription	Left Ventricle	heart

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