Variant report

Variant	rs56300006
Chromosome Location	chr8:38818557-38818558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38808571..38813018-chr8:38815096..38820792,6	K562	blood:
2	chr8:38817416..38820372-chr8:38822881..38825576,2	K562	blood:

Variant related genes	Relation type
ENSG00000169499	Chromatin interaction

rs_ID	r²[population]
rs55736573	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56359509	0.83[AMR][1000 genomes]
rs58771784	0.83[AMR][1000 genomes]
rs59451782	0.83[AMR][1000 genomes]
rs73674664	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73674665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674680	0.83[AMR][1000 genomes]
rs73674681	0.83[AMR][1000 genomes]
rs73674682	0.83[AMR][1000 genomes]
rs73674683	0.83[AMR][1000 genomes]

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38798800-38820600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:38799000-38820800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr8:38799000-38822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:38799600-38821200	Strong transcription	Hela-S3	cervix
7	chr8:38800000-38820000	Strong transcription	Fetal Stomach	stomach
8	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:38801600-38819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:38801600-38819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:38802600-38819600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr8:38802800-38831000	Weak transcription	K562	blood
13	chr8:38805600-38818800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:38806200-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:38806600-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:38807000-38820200	Strong transcription	Fetal Lung	lung
17	chr8:38807200-38818800	Strong transcription	Dnd41	blood
18	chr8:38807800-38820000	Strong transcription	Fetal Intestine Small	intestine
19	chr8:38808000-38818800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:38808200-38819600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:38809000-38818600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:38809000-38820200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:38809400-38820600	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr8:38809600-38820000	Strong transcription	HMEC	breast
25	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:38811800-38819800	Weak transcription	Fetal Heart	heart
27	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
28	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
29	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:38815000-38820600	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain
32	chr8:38815600-38818800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr8:38815600-38820000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:38815600-38820000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:38815600-38820000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr8:38815600-38820600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:38815600-38820800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr8:38815600-38823600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:38816000-38819400	Strong transcription	NH-A	brain
41	chr8:38816000-38822200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:38816000-38825600	Weak transcription	HSMMtube	muscle
43	chr8:38816200-38819600	Strong transcription	Left Ventricle	heart
44	chr8:38816200-38819800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:38816200-38819800	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr8:38816200-38819800	Strong transcription	Aorta	Aorta
47	chr8:38816200-38820200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr8:38816200-38820600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr8:38816200-38820600	Strong transcription	HSMM	muscle
50	chr8:38816200-38820800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links