Variant report

Variant	rs73674681
Chromosome Location	chr8:38851738-38851739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55736573	1.00[AMR][1000 genomes]
rs56061814	0.81[AFR][1000 genomes]
rs56300006	0.83[AMR][1000 genomes]
rs56316649	0.92[AFR][1000 genomes]
rs56359509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58971487	0.87[AFR][1000 genomes]
rs59451782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61456957	0.81[AFR][1000 genomes]
rs73674664	1.00[AMR][1000 genomes]
rs73674665	0.83[AMR][1000 genomes]
rs73674666	0.83[AMR][1000 genomes]
rs73674680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674684	0.97[AFR][1000 genomes]
rs73674685	0.97[AFR][1000 genomes]
rs73674693	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv820251	chr8:38848740-38853026	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38832600-38853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:38845400-38852000	Strong transcription	Osteobl	bone
3	chr8:38845800-38851800	Strong transcription	Fetal Muscle Leg	muscle
4	chr8:38846000-38852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:38846400-38852200	Strong transcription	Brain Inferior Temporal Lobe	brain
6	chr8:38846400-38852400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:38846400-38852400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:38846400-38852600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr8:38846600-38852200	Weak transcription	Fetal Heart	heart
10	chr8:38846600-38852400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:38846600-38853000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr8:38846800-38852200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:38847400-38852000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:38847400-38852000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:38847400-38852200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:38847400-38852400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:38847400-38852800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:38847600-38851800	Strong transcription	Primary T cells from cord blood	blood
19	chr8:38847600-38852000	Strong transcription	Placenta	Placenta
20	chr8:38847600-38852000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr8:38847600-38852200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:38847600-38852400	Strong transcription	Fetal Thymus	thymus
23	chr8:38847800-38851800	Strong transcription	Left Ventricle	heart
24	chr8:38847800-38851800	Strong transcription	HMEC	breast
25	chr8:38847800-38852400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr8:38848000-38852000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr8:38848000-38852000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:38848000-38852200	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr8:38848800-38852200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:38849000-38852200	Weak transcription	Psoas Muscle	Psoas
31	chr8:38849200-38851800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr8:38849200-38852000	Weak transcription	Stomach Mucosa	stomach
33	chr8:38849600-38852200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr8:38849600-38852200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:38849600-38853200	Weak transcription	Gastric	stomach
36	chr8:38850000-38852200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:38850400-38851800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:38850400-38852000	Weak transcription	Brain Substantia Nigra	brain
39	chr8:38850400-38852000	Genic enhancers	Dnd41	blood
40	chr8:38850400-38852200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr8:38850400-38852400	Weak transcription	Fetal Kidney	kidney
42	chr8:38850400-38852400	Weak transcription	Lung	lung
43	chr8:38850600-38852000	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr8:38850600-38852200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:38850600-38852200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr8:38850800-38852000	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:38850800-38852000	Genic enhancers	Fetal Lung	lung
48	chr8:38850800-38852400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr8:38850800-38852400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:38850800-38852800	Enhancers	Colon Smooth Muscle	Colon

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