The 2.0 version of rSNPBase

Variant report

Variant rs56316649
Chromosome Location chr8:38876836-38876837
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:38855800-38881600 Weak transcription Fetal Kidney kidney
2 chr8:38856600-38889600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr8:38856800-38889600 Weak transcription Colonic Mucosa Colon
4 chr8:38857200-38881400 Weak transcription Fetal Brain Female brain
5 chr8:38862600-38884400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr8:38862800-38878200 Weak transcription H9 Cell Line embryonic stem cell
7 chr8:38863400-38883200 Weak transcription Brain Germinal Matrix brain
8 chr8:38863600-38881000 Weak transcription Small Intestine intestine
9 chr8:38865000-38880600 Weak transcription Brain Substantia Nigra brain
10 chr8:38865000-38881400 Weak transcription Spleen Spleen
11 chr8:38865000-38887200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr8:38865000-38889600 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr8:38865200-38877800 Strong transcription Cortex derived primary cultured neurospheres brain
14 chr8:38865200-38887400 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr8:38865400-38877200 Strong transcription iPS-20b Cell Line embryonic stem cell
16 chr8:38865400-38886000 Strong transcription Primary neutrophils fromperipheralblood blood
17 chr8:38865400-38887800 Strong transcription HSMM muscle
18 chr8:38865400-38888800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr8:38865600-38888200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr8:38865600-38889000 Strong transcription Primary monocytes fromperipheralblood blood
21 chr8:38866000-38888400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr8:38867000-38880400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr8:38868200-38881200 Weak transcription Rectal Smooth Muscle rectum
24 chr8:38869000-38877600 Strong transcription HUES6 Cell Line embryonic stem cell
25 chr8:38869600-38902800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr8:38869800-38877400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr8:38869800-38880200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr8:38869800-38880200 Weak transcription Lung lung
29 chr8:38869800-38881400 Weak transcription Right Ventricle heart
30 chr8:38869800-38883200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr8:38869800-38885200 Weak transcription Aorta Aorta
32 chr8:38869800-38888400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr8:38870000-38879200 Weak transcription Liver Liver
34 chr8:38870000-38881200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr8:38870000-38881800 Weak transcription Brain Inferior Temporal Lobe brain
36 chr8:38870000-38886400 Weak transcription Pancreas Pancrea
37 chr8:38871000-38877600 Strong transcription HUES48 Cell Line embryonic stem cell
38 chr8:38871600-38877600 Strong transcription Primary hematopoietic stem cells blood
39 chr8:38872000-38886200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr8:38872000-38890400 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr8:38872200-38877800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr8:38872400-38881400 Strong transcription HMEC breast
43 chr8:38872400-38888200 Strong transcription Fetal Intestine Large intestine
44 chr8:38872600-38889600 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr8:38872600-38889800 Weak transcription Primary B cells from peripheral blood blood
46 chr8:38872800-38888000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr8:38873200-38883800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr8:38873400-38877400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr8:38873400-38883800 Strong transcription NHDF-Ad bronchial
50 chr8:38873600-38879200 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015