Variant report

Variant	rs58971487
Chromosome Location	chr8:38898288-38898289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38895697..38898348-chr8:38953067..38955793,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55985346	1.00[AMR][1000 genomes]
rs56061814	1.00[AMR][1000 genomes]
rs56316649	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56359509	0.82[AFR][1000 genomes]
rs58771784	0.82[AFR][1000 genomes]
rs59451782	0.81[AFR][1000 genomes]
rs61456957	1.00[AMR][1000 genomes]
rs73674680	0.82[AFR][1000 genomes]
rs73674681	0.87[AFR][1000 genomes]
rs73674682	0.87[AFR][1000 genomes]
rs73674683	0.87[AFR][1000 genomes]
rs73674684	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674693	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7821313	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
3	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:38885000-38899400	Weak transcription	Liver	Liver
5	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
6	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
8	chr8:38885800-38911200	Weak transcription	Ovary	ovary
9	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
10	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
12	chr8:38888000-38899600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
14	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
15	chr8:38888800-38901600	Weak transcription	Fetal Brain Male	brain
16	chr8:38889000-38899600	Weak transcription	Fetal Lung	lung
17	chr8:38890000-38904400	Weak transcription	Gastric	stomach
18	chr8:38890200-38904400	Weak transcription	Esophagus	oesophagus
19	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:38890400-38903400	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:38890400-38904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:38890400-38904200	Weak transcription	Fetal Intestine Small	intestine
24	chr8:38890400-38904200	Weak transcription	Lung	lung
25	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:38892600-38901000	Weak transcription	Dnd41	blood
27	chr8:38895200-38898400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr8:38895600-38899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:38895600-38902000	Weak transcription	Right Ventricle	heart
30	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
31	chr8:38895800-38899400	Weak transcription	Brain Angular Gyrus	brain
32	chr8:38895800-38899600	Weak transcription	Fetal Heart	heart
33	chr8:38895800-38901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:38896000-38901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:38896200-38899800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:38896200-38900600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:38896200-38900800	Genic enhancers	HSMM	muscle
40	chr8:38896200-38901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:38896200-38907600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
43	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
44	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr8:38896400-38900200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:38896400-38916400	Weak transcription	K562	blood
47	chr8:38896600-38899400	Weak transcription	HepG2	liver
48	chr8:38896600-38899600	Weak transcription	Brain Hippocampus Middle	brain
49	chr8:38896600-38905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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