Variant report

Variant	rs56304225
Chromosome Location	chr10:89912796-89912797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89912523..89913196-chr3:73160110..73160626,2	Hela-S3	cervix:
2	chr10:89912746..89913719-chr21:36180040..36181009,2	Hela-S3	cervix:
3	chr10:89621634..89623647-chr10:89910857..89914293,5	MCF-7	breast:
4	chr10:89912312..89912973-chr18:77249842..77250734,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs74146665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146671	1.00[AFR][1000 genomes]
rs74146676	1.00[AMR][1000 genomes]
rs74146677	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv982855	chr10:89909945-89918540	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89908400-89917200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:89909200-89918600	Enhancers	Hela-S3	cervix
3	chr10:89909200-89919200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:89909200-89919200	Enhancers	NHDF-Ad	bronchial
5	chr10:89909400-89913600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:89909400-89913600	Enhancers	HMEC	breast
7	chr10:89909400-89916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:89909400-89919200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:89910200-89917400	Weak transcription	HSMMtube	muscle
10	chr10:89911400-89913200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:89911600-89913200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:89911600-89913400	Enhancers	Osteobl	bone
13	chr10:89911600-89913600	Enhancers	NHEK	skin
14	chr10:89911600-89914000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:89911800-89912800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:89911800-89912800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:89911800-89913200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:89911800-89913400	Enhancers	NHLF	lung
19	chr10:89911800-89913600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:89912000-89912800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:89912000-89913000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:89912000-89913000	Enhancers	Dnd41	blood
23	chr10:89912000-89913200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:89912000-89913200	Enhancers	Primary T cells from cord blood	blood
25	chr10:89912000-89913200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:89912000-89913200	Enhancers	HSMM	muscle
27	chr10:89912000-89913400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:89912000-89913400	Enhancers	HUVEC	blood vessel
29	chr10:89912000-89913600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:89912200-89912800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr10:89912200-89912800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr10:89912200-89912800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:89912200-89912800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:89912200-89912800	Enhancers	Esophagus	oesophagus
35	chr10:89912200-89912800	Enhancers	Left Ventricle	heart
36	chr10:89912200-89912800	Enhancers	Pancreas	Pancrea
37	chr10:89912200-89912800	Enhancers	Thymus	Thymus
38	chr10:89912200-89912800	Enhancers	A549	lung
39	chr10:89912200-89913000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr10:89912200-89913000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:89912200-89913000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:89912200-89913000	Enhancers	Right Atrium	heart
43	chr10:89912200-89913000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:89912200-89913200	Enhancers	Primary B cells from peripheral blood	blood
45	chr10:89912200-89913200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:89912200-89913200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr10:89912200-89913200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:89912400-89912800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr10:89912400-89912800	Enhancers	Psoas Muscle	Psoas
50	chr10:89912400-89912800	Enhancers	Small Intestine	intestine

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