Variant report

Variant	rs56306550
Chromosome Location	chr9:84622845-84622846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12335647	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12336197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338395	0.86[AMR][1000 genomes]
rs12344716	0.86[EUR][1000 genomes]
rs12345231	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12345266	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12351812	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1334759	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1855607	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56281129	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57223205	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57386263	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57921200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58931877	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60427225	0.82[AMR][1000 genomes]
rs9886839	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886873	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9987870	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv973443	chr9:84618817-84635284	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84622400-84624600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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