Variant report

Variant	rs57223205
Chromosome Location	chr9:84706807-84706808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12335647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336197	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12337550	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12342604	1.00[ASN][1000 genomes]
rs12344716	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334759	0.81[EUR][1000 genomes]
rs56306550	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57921200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463500	0.83[ASN][1000 genomes]
rs9886839	0.88[EUR][1000 genomes]
rs9886873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84704600-84710000	Enhancers	Primary B cells from cord blood	blood
2	chr9:84705200-84710400	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:84705800-84707800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:84706000-84707000	Enhancers	Fetal Muscle Leg	muscle
5	chr9:84706000-84707000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr9:84706000-84707000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:84706200-84707200	Enhancers	Psoas Muscle	Psoas
8	chr9:84706800-84707000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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