Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:84680676-84681146	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
SPATA31B1	TF binding region

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10118455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10217389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139464	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139465	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12001732	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12335647	1.00[ASN][1000 genomes]
rs12337550	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12338553	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12339026	1.00[JPT][hapmap]
rs12340419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342760	0.82[EUR][1000 genomes]
rs12345231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12351832	0.88[CEU][hapmap]
rs1334759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334760	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334761	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413798	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57223205	1.00[ASN][1000 genomes]
rs6559647	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6559649	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73463500	0.83[ASN][1000 genomes]
rs7865884	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9886873	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv968712	chr9:84667794-84682249	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv973379	chr9:84677143-84682249	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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