Variant report

Variant	rs7865884
Chromosome Location	chr9:84572804-84572805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10118455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10217389	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11139464	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11139465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12006037	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12338553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12339026	1.00[JPT][hapmap]
rs12340419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12340473	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12341327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342604	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342760	0.81[EUR][1000 genomes]
rs12345231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12353488	0.88[AMR][1000 genomes]
rs1334759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap]
rs1334761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413797	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs1413798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1855607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4387056	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56362208	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6559647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap]
rs6559649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7033826	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73480345	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848039	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853579	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv6584	chr9:84547871-84606452	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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