Variant report

Variant	rs56362208
Chromosome Location	chr9:84648468-84648469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1006665	0.86[EUR][1000 genomes]
rs1028847	0.86[EUR][1000 genomes]
rs1028848	0.86[EUR][1000 genomes]
rs11139465	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12001732	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12006037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338553	0.90[EUR][1000 genomes]
rs12340473	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342760	0.92[EUR][1000 genomes]
rs1413798	0.82[AMR][1000 genomes]
rs4387056	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58039378	0.87[EUR][1000 genomes]
rs7033826	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480345	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648102	0.88[EUR][1000 genomes]
rs7848039	0.89[EUR][1000 genomes]
rs7853579	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84636800-84649800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:84647000-84652200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:84647200-84650200	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:84647200-84656200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:84647800-84649600	Weak transcription	Fetal Brain Female	brain
6	chr9:84648000-84650000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:84648200-84650200	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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