Variant report

Variant	rs1028848
Chromosome Location	chr9:84731809-84731810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1006665	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10118455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1028847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139464	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11139465	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap]
rs12001732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12006037	0.86[EUR][1000 genomes]
rs12338553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12339026	1.00[JPT][hapmap]
rs12340419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12340473	0.84[EUR][1000 genomes]
rs12341327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342604	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342760	0.93[EUR][1000 genomes]
rs1334759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1334761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4387056	0.85[EUR][1000 genomes]
rs56362208	0.86[EUR][1000 genomes]
rs58039378	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6559647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6559649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7033826	0.84[EUR][1000 genomes]
rs73480345	0.86[EUR][1000 genomes]
rs73648102	0.89[EUR][1000 genomes]
rs7853579	0.86[EUR][1000 genomes]
rs7865884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84729800-84733600	Enhancers	Brain Anterior Caudate	brain
2	chr9:84730400-84732800	Enhancers	Fetal Muscle Leg	muscle
3	chr9:84730600-84732000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:84730600-84732200	Enhancers	Brain Germinal Matrix	brain
5	chr9:84730600-84732800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:84730600-84733000	Enhancers	Fetal Lung	lung
7	chr9:84730800-84732000	Enhancers	Brain Hippocampus Middle	brain
8	chr9:84730800-84732200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:84730800-84732800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:84730800-84732800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:84730800-84732800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:84731000-84732000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:84731000-84732600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:84731000-84732600	Enhancers	Brain Cingulate Gyrus	brain
15	chr9:84731000-84732800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:84731000-84732800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:84731000-84732800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:84731000-84733400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:84731200-84732200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:84731200-84732200	Enhancers	Brain Substantia Nigra	brain
21	chr9:84731200-84732600	Weak transcription	Psoas Muscle	Psoas
22	chr9:84731200-84732800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:84731400-84732000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:84731400-84732000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:84731400-84732600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:84731400-84732600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:84731400-84732600	Enhancers	Fetal Kidney	kidney
28	chr9:84731600-84732000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:84731600-84732000	Enhancers	Brain Angular Gyrus	brain
30	chr9:84731600-84732600	Enhancers	Stomach Smooth Muscle	stomach
31	chr9:84731600-84732800	Enhancers	Fetal Stomach	stomach
32	chr9:84731800-84732200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr9:84731800-84732400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:84731800-84732800	Weak transcription	NHDF-Ad	bronchial

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