Variant report

Variant	rs12001732
Chromosome Location	chr9:84677101-84677102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:84676980-84677130	HBMEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
SPATA31B1	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006665	0.80[EUR][1000 genomes]
rs10118455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10217389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1028847	0.80[EUR][1000 genomes]
rs1028848	0.80[EUR][1000 genomes]
rs11139464	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12338553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12339026	1.00[JPT][hapmap]
rs12340419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12340473	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12341327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342604	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342760	0.86[EUR][1000 genomes]
rs12345231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56362208	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58039378	0.81[EUR][1000 genomes]
rs6559647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6559649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7033826	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73648102	0.83[EUR][1000 genomes]
rs7853579	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7865884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv968712	chr9:84667794-84682249	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84676800-84677200	Enhancers	Fetal Muscle Trunk	muscle
2	chr9:84677000-84677400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:84677000-84677400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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