Variant report
| Variant | rs11139464 |
|---|---|
| Chromosome Location | chr9:84589488-84589489 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:84581823..84583506-chr9:84588522..84590887,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10118455 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10217389 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs11139465 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs12001732 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12338553 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12339026 | 1.00[JPT][hapmap] |
| rs12340419 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12341327 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12341627 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12342604 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12345231 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1334759 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1334760 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1334761 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1413797 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs1413798 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1855607 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6559647 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6559649 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7023372 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs73480341 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7865884 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831639 | chr9:84501548-84651151 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv6584 | chr9:84547871-84606452 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
