Variant report

Variant	rs12341327
Chromosome Location	chr9:84680133-84680134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10118455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10217389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139464	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12001732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12335647	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336197	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12337550	0.83[ASN][1000 genomes]
rs12338553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12339026	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12340419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12344716	0.94[EUR][1000 genomes]
rs12345231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1334759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1334760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334761	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56306550	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57223205	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57921200	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6559647	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6559649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73463500	0.83[ASN][1000 genomes]
rs7865884	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9886839	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9886873	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv968712	chr9:84667794-84682249	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv973379	chr9:84677143-84682249	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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