Variant report

Variant	rs12340473
Chromosome Location	chr9:84636881-84636882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1006665	0.84[EUR][1000 genomes]
rs10118455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10217389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1028847	0.84[EUR][1000 genomes]
rs1028848	0.84[EUR][1000 genomes]
rs11139464	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11139465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12001732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12006037	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12339026	1.00[JPT][hapmap]
rs12340419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12341627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342604	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12342760	0.90[EUR][1000 genomes]
rs12345231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12353488	0.85[AMR][1000 genomes]
rs1334759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs1855607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4387056	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362208	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58039378	0.85[EUR][1000 genomes]
rs6559647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6559649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7033826	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480345	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648102	0.86[EUR][1000 genomes]
rs7848039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7853579	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7865884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84634800-84638600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:84635400-84637200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:84635600-84638000	Enhancers	NHDF-Ad	bronchial
4	chr9:84635600-84638200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:84635800-84637200	Enhancers	HMEC	breast
6	chr9:84636200-84637200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:84636200-84637200	Enhancers	NHLF	lung
8	chr9:84636200-84638000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:84636400-84646600	Weak transcription	Aorta	Aorta
10	chr9:84636600-84637600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:84636600-84637600	Weak transcription	Fetal Brain Female	brain
12	chr9:84636800-84649800	Weak transcription	Rectal Smooth Muscle	rectum

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