Variant report

Variant	rs12353488
Chromosome Location	chr9:84515411-84515412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11139465	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs12001732	1.00[CEU][hapmap]
rs12338553	1.00[CEU][hapmap]
rs12340473	0.85[AMR][1000 genomes]
rs12341627	1.00[CEU][hapmap]
rs12342604	0.89[CEU][hapmap]
rs12348676	0.94[EUR][1000 genomes]
rs1334760	1.00[CEU][hapmap]
rs1334761	1.00[CEU][hapmap]
rs1413798	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6559647	1.00[CEU][hapmap]
rs6559649	1.00[CEU][hapmap]
rs7023372	1.00[CEU][hapmap]
rs7033826	0.91[AMR][1000 genomes]
rs7865884	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84514600-84515600	Enhancers	Fetal Lung	lung
2	chr9:84515000-84515800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr9:84515000-84516000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:84515400-84515800	Enhancers	Aorta	Aorta
5	chr9:84515400-84516000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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