Variant report

Variant	rs58039378
Chromosome Location	chr9:84728114-84728115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1006665	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028847	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1028848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12001732	0.81[EUR][1000 genomes]
rs12006037	0.82[EUR][1000 genomes]
rs12338553	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340473	0.85[EUR][1000 genomes]
rs12342760	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4387056	0.81[EUR][1000 genomes]
rs56362208	0.87[EUR][1000 genomes]
rs7033826	0.85[EUR][1000 genomes]
rs73480345	0.82[EUR][1000 genomes]
rs73648102	0.86[EUR][1000 genomes]
rs7853579	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84722400-84731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:84724800-84731800	Weak transcription	Pancreas	Pancrea
3	chr9:84727600-84730600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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