Variant report

Variant	rs56310951
Chromosome Location	chr7:63333551-63333552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17138416	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17840380	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3751565	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717940	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55723393	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56149388	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56229596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249171	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56378232	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56381247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123042	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123044	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123058	0.81[EUR][1000 genomes]
rs73123067	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73123069	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123077	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73123091	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73123093	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478284	chr7:62531504-63351786	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
2	esv3478287	chr7:62531504-63351786	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1016602	chr7:62623431-63339807	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
5	nsv888256	chr7:63201491-63343473	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
6	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
9	nsv970853	chr7:63331253-63339310	ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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