Variant report

Variant	rs73123069
Chromosome Location	chr7:63367167-63367168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10227601	0.84[EUR][1000 genomes]
rs10238234	0.83[EUR][1000 genomes]
rs10245110	0.83[EUR][1000 genomes]
rs11978874	0.83[EUR][1000 genomes]
rs17138355	0.83[EUR][1000 genomes]
rs17138416	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17840380	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2033829	0.83[EUR][1000 genomes]
rs3751565	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717940	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55723393	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56149388	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56229596	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56249171	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56310951	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56378232	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56381247	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56696237	0.83[EUR][1000 genomes]
rs6460102	0.84[EUR][1000 genomes]
rs66487504	0.84[EUR][1000 genomes]
rs73123042	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123044	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123067	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73123077	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73123091	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73123093	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73127180	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv966815	chr7:63359141-63370063	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	esv3365963	chr7:63367092-63587809	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63361800-63370800	Weak transcription	Aorta	Aorta
2	chr7:63361800-63372800	Weak transcription	Esophagus	oesophagus
3	chr7:63361800-63379000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:63362200-63372800	Weak transcription	Ovary	ovary
5	chr7:63362200-63376200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:63362400-63372800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:63362400-63372800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:63362400-63384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:63363200-63374600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:63364600-63373200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:63365800-63367200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:63365800-63367800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr7:63366400-63368200	ZNF genes & repeats	Dnd41	blood
14	chr7:63366600-63367200	Strong transcription	Pancreatic Islets	Pancreatic Islet

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