Variant report

Variant	rs56311058
Chromosome Location	chr6:11918919-11918920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11914819..11917032-chr6:11917286..11919137,2	K562	blood:
3	chr6:11911981..11914460-chr6:11917367..11919083,2	K562	blood:
4	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
5	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
6	chr6:11918788..11920525-chr6:12013699..12015737,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP1-6	chr6:11918821-11918968	NONHSAT107769

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10214531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536305	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909793	0.92[ASN][1000 genomes]
rs9462257	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470484	0.88[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11916000-11919200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
3	chr6:11918000-11919000	Enhancers	NHDF-Ad	bronchial
4	chr6:11918000-11919400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:11918000-11919600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:11918000-11919600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:11918000-11919800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:11918000-11919800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:11918000-11919800	Enhancers	Fetal Intestine Large	intestine
10	chr6:11918000-11919800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:11918000-11919800	Enhancers	HSMM	muscle
12	chr6:11918000-11919800	Enhancers	Osteobl	bone
13	chr6:11918000-11920200	Enhancers	Fetal Stomach	stomach
14	chr6:11918000-11920200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:11918200-11919200	Enhancers	Colon Smooth Muscle	Colon
17	chr6:11918200-11919400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:11918200-11919400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:11918200-11919400	Enhancers	Brain Anterior Caudate	brain
20	chr6:11918200-11919400	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:11918200-11919400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr6:11918200-11919400	Enhancers	Colonic Mucosa	Colon
23	chr6:11918200-11919400	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:11918200-11919400	Enhancers	Fetal Intestine Small	intestine
25	chr6:11918200-11919400	Enhancers	Fetal Kidney	kidney
26	chr6:11918200-11919400	Enhancers	Placenta	Placenta
27	chr6:11918200-11919400	Enhancers	Left Ventricle	heart
28	chr6:11918200-11919400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:11918200-11919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:11918200-11919800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:11918200-11919800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:11918200-11919800	Enhancers	Ovary	ovary
33	chr6:11918200-11919800	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:11918200-11919800	Flanking Active TSS	K562	blood
35	chr6:11918200-11919800	Enhancers	NH-A	brain
36	chr6:11918200-11920000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:11918200-11920200	Enhancers	Fetal Lung	lung
38	chr6:11918200-11920600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
44	chr6:11918400-11919000	Enhancers	Small Intestine	intestine
45	chr6:11918400-11919400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:11918400-11919600	Enhancers	Brain Hippocampus Middle	brain
47	chr6:11918400-11919600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:11918400-11919800	Enhancers	Brain Germinal Matrix	brain
49	chr6:11918400-11922400	Enhancers	NHEK	skin
50	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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