Variant report

Variant	rs1536305
Chromosome Location	chr6:11922715-11922716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11922189..11924916-chr6:12009286..12013032,3	K562	blood:
2	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
3	chr6:11922420..11924748-chr6:11934170..11937049,2	K562	blood:
4	chr6:11921705..11923918-chr6:11929998..11931950,2	MCF-7	breast:
5	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
6	chr6:11916020..11917550-chr6:11921352..11923792,2	K562	blood:
7	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
8	chr6:11916050..11918300-chr6:11921352..11923216,2	K562	blood:
9	chr6:11922704..11924727-chr6:12009251..12011603,2	K562	blood:
10	chr6:11920056..11922933-chr6:11926115..11927726,3	K562	blood:
11	chr6:11922270..11924751-chr6:11942843..11945942,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10214531	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1205848	0.84[ASN][1000 genomes]
rs1205868	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1205869	0.80[ASN][1000 genomes]
rs1205886	1.00[CHB][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs169715	1.00[CHD][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28511	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs56311058	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909793	0.96[ASN][1000 genomes]
rs9462257	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470484	0.92[ASN][1000 genomes]
rs9470644	1.00[CHB][hapmap]
rs9470780	1.00[CHB][hapmap]
rs9470793	1.00[CHB][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:11921200-11923400	Enhancers	Fetal Lung	lung
6	chr6:11921600-11926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:11921600-11926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:11921600-11926200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:11921600-11926200	Weak transcription	Esophagus	oesophagus
10	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
11	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11922000-11922800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:11922200-11923200	Weak transcription	NHDF-Ad	bronchial
14	chr6:11922200-11923400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:11922200-11923600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:11922200-11924000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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