Variant report

Variant	rs1205886
Chromosome Location	chr6:11948078-11948079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11942314..11946137-chr6:11947181..11949367,4	K562	blood:
2	chr6:11947439..11949235-chr6:11953867..11956602,2	K562	blood:
3	chr6:11947667..11952733-chr6:12010159..12014739,6	K562	blood:
4	chr6:11948021..11949598-chr6:12004227..12006951,2	K562	blood:
5	chr6:11947385..11949029-chr6:11979170..11980686,2	K562	blood:
6	chr6:11945990..11949036-chr6:11950804..11953646,3	K562	blood:
7	chr6:11947667..11952221-chr6:12010159..12014739,5	K562	blood:
8	chr6:11928396..11930237-chr6:11946465..11949444,2	K562	blood:
9	chr6:11946393..11948154-chr6:11992265..11994588,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1205848	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205868	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1205869	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1536305	1.00[CHB][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs169715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909793	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462257	0.84[ASN][1000 genomes]
rs9470484	0.84[ASN][1000 genomes]
rs9470644	1.00[CHB][hapmap]
rs9470753	0.80[AMR][1000 genomes]
rs9470780	1.00[CHB][hapmap]
rs9470793	1.00[CHB][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11948000-11949800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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