Variant report

Variant	rs9470793
Chromosome Location	chr6:12032134-12032135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12031473..12034779-chr6:12051135..12055032,3	K562	blood:
2	chr6:12029801..12032269-chr6:12032604..12035769,3	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10947708	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11751417	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753078	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753533	1.00[CEU][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11963539	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967367	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1205886	1.00[CHB][hapmap]
rs1409287	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536305	1.00[CHB][hapmap]
rs1574343	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs172353	0.82[AMR][1000 genomes]
rs186017	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs209800	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs209804	0.81[AMR][1000 genomes]
rs209805	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs209806	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs209807	0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs209809	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28511	1.00[CHB][hapmap]
rs57760403	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395280	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62395444	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395445	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395448	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395449	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395450	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395451	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62398268	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398271	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6907381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72824063	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72824066	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72826014	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753800	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762263	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462320	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462323	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462325	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462326	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462327	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462328	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462329	0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462335	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9462336	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462338	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462342	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462365	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462366	0.89[ASN][1000 genomes]
rs9462378	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462379	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462407	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462408	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470618	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470623	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470625	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470627	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470628	0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470629	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470631	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470634	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470638	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470643	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470647	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470649	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470652	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470670	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9470673	1.00[CEU][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470692	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470698	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470699	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470713	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470718	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470720	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470721	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470741	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470749	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470750	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470752	0.91[CEU][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470754	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470756	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470768	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9470780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470808	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470821	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
3	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
4	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
6	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
9	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:12020800-12034200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:12020800-12034600	Weak transcription	Right Ventricle	heart
12	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:12021800-12033600	Weak transcription	Spleen	Spleen
15	chr6:12021800-12034200	Weak transcription	Fetal Brain Female	brain
16	chr6:12022000-12034000	Weak transcription	A549	lung
17	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
18	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:12023600-12034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:12024800-12033600	ZNF genes & repeats	GM12878-XiMat	blood
23	chr6:12025200-12034200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:12025400-12033400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:12025400-12034200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:12025400-12034200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:12025600-12034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:12025800-12034600	Weak transcription	Stomach Mucosa	stomach
29	chr6:12026000-12034600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:12026000-12034800	Weak transcription	Aorta	Aorta
31	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial
32	chr6:12026200-12033600	Weak transcription	Right Atrium	heart
33	chr6:12026200-12034200	Weak transcription	Ovary	ovary
34	chr6:12026600-12033400	Weak transcription	Small Intestine	intestine
35	chr6:12027600-12032200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:12028000-12034200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:12028800-12033400	Weak transcription	HUVEC	blood vessel
38	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:12029400-12032200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr6:12029800-12034600	Weak transcription	Left Ventricle	heart
41	chr6:12029800-12042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:12030000-12034000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:12030600-12032800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:12030600-12033200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:12030600-12033800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:12030600-12034000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:12030600-12034200	Weak transcription	Fetal Lung	lung
48	chr6:12030600-12037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:12030600-12037400	Weak transcription	Primary B cells from cord blood	blood
50	chr6:12030800-12032200	ZNF genes & repeats	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links