The 2.0 version of rSNPBase

Variant report

Variant rs7748578
Chromosome Location chr6:12014761-12014762
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12013400-12014800 Active TSS Brain Germinal Matrix brain
2 chr6:12013600-12015000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:12013600-12015200 Flanking Active TSS HUVEC blood vessel
4 chr6:12013800-12015000 Weak transcription Esophagus oesophagus
5 chr6:12013800-12015000 Weak transcription Small Intestine intestine
6 chr6:12013800-12015400 Weak transcription Fetal Thymus thymus
7 chr6:12013800-12015400 Enhancers Pancreas Pancrea
8 chr6:12013800-12016800 Weak transcription Thymus Thymus
9 chr6:12013800-12017000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr6:12013800-12017000 Weak transcription Primary T cells fromperipheralblood blood
11 chr6:12013800-12017000 Weak transcription Left Ventricle heart
12 chr6:12013800-12017000 Weak transcription Lung lung
13 chr6:12013800-12017000 Weak transcription Right Ventricle heart
14 chr6:12013800-12017000 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr6:12013800-12017000 Weak transcription Spleen Spleen
16 chr6:12013800-12017400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr6:12013800-12017400 Weak transcription Gastric stomach
18 chr6:12013800-12018200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr6:12013800-12033600 Weak transcription Psoas Muscle Psoas
20 chr6:12014000-12014800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr6:12014000-12014800 Enhancers Primary T cells from cord blood blood
22 chr6:12014000-12015000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr6:12014000-12015000 Weak transcription Brain Anterior Caudate brain
24 chr6:12014000-12015000 Enhancers Fetal Intestine Small intestine
25 chr6:12014000-12015000 Weak transcription Fetal Muscle Trunk muscle
26 chr6:12014000-12015000 Weak transcription Fetal Muscle Leg muscle
27 chr6:12014000-12015200 Weak transcription Primary B cells from peripheral blood blood
28 chr6:12014000-12015200 Weak transcription Brain Cingulate Gyrus brain
29 chr6:12014000-12015800 Enhancers Primary T helper cells PMA-I stimulated --
30 chr6:12014000-12016000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr6:12014000-12016200 Weak transcription Duodenum Mucosa Duodenum
32 chr6:12014000-12016400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr6:12014000-12016800 Weak transcription H9 Cell Line embryonic stem cell
34 chr6:12014000-12016800 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr6:12014000-12017000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr6:12014000-12017000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr6:12014000-12017000 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr6:12014000-12017000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr6:12014000-12017000 Weak transcription Placenta Amnion Placenta Amnion
40 chr6:12014000-12017000 Weak transcription Rectal Smooth Muscle rectum
41 chr6:12014000-12017000 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr6:12014000-12017400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr6:12014000-12017400 Weak transcription Colon Smooth Muscle Colon
44 chr6:12014000-12020400 Weak transcription Brain Hippocampus Middle brain
45 chr6:12014000-12023200 Weak transcription ES-WA7 Cell Line embryonic stem cell
46 chr6:12014000-12023200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr6:12014000-12031800 Weak transcription Brain Substantia Nigra brain
48 chr6:12014200-12014800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr6:12014200-12015000 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr6:12014200-12015000 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015