Variant report

Variant	rs7741598
Chromosome Location	chr6:12034028-12034029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12011848..12014555-chr6:12033486..12035061,2	MCF-7	breast:
2	chr6:11771369..11773574-chr6:12033806..12036674,2	MCF-7	breast:
3	chr6:12031473..12034779-chr6:12051135..12055032,3	K562	blood:
4	chr6:12029801..12032269-chr6:12032604..12035769,3	MCF-7	breast:
5	chr6:12010741..12013638-chr6:12032864..12036140,5	MCF-7	breast:
6	chr6:12033628..12035802-chr6:12038065..12040116,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10947708	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751417	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11753078	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11753533	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11963539	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967367	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1409287	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1574343	0.93[AMR][1000 genomes]
rs172353	0.82[AMR][1000 genomes]
rs186017	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs209800	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs209804	0.81[AMR][1000 genomes]
rs209805	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs209806	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs209807	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs209809	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57760403	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395444	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395445	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395448	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395449	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395450	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395451	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62398268	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62398271	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62398272	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72824063	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72824066	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72826014	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7748578	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753800	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762263	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462320	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462323	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462325	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462326	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462327	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462328	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462329	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462335	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9462336	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462338	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462342	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462365	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462366	0.87[ASN][1000 genomes]
rs9462378	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470618	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470623	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470625	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470627	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470628	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470629	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470631	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470634	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470638	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470643	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470644	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470647	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470649	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470652	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470670	0.83[ASN][1000 genomes]
rs9470673	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470682	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470692	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470698	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470699	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470713	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470718	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470720	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470721	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470749	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470750	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470752	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470754	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470756	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470768	0.95[ASN][1000 genomes]
rs9470780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470793	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
2	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
4	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
7	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:12020800-12034200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:12020800-12034600	Weak transcription	Right Ventricle	heart
10	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:12021800-12034200	Weak transcription	Fetal Brain Female	brain
13	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
14	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:12023600-12034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:12025200-12034200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:12025400-12034200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:12025400-12034200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:12025600-12034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:12025800-12034600	Weak transcription	Stomach Mucosa	stomach
23	chr6:12026000-12034600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:12026000-12034800	Weak transcription	Aorta	Aorta
25	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial
26	chr6:12026200-12034200	Weak transcription	Ovary	ovary
27	chr6:12028000-12034200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:12029800-12034600	Weak transcription	Left Ventricle	heart
30	chr6:12029800-12042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:12030600-12034200	Weak transcription	Fetal Lung	lung
32	chr6:12030600-12037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:12030600-12037400	Weak transcription	Primary B cells from cord blood	blood
34	chr6:12030800-12034600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:12031000-12034200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:12031400-12037200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:12031600-12034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:12031600-12037000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:12031800-12034200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:12031800-12034600	Weak transcription	Lung	lung
41	chr6:12031800-12035000	Weak transcription	NHLF	lung
42	chr6:12032000-12034200	Weak transcription	HepG2	liver
43	chr6:12032000-12039800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:12032000-12044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:12032000-12044800	Weak transcription	NH-A	brain
46	chr6:12032000-12047600	Weak transcription	Fetal Stomach	stomach
47	chr6:12032200-12034200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:12032200-12034200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:12032200-12034200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:12032200-12034200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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