Variant report

Variant	rs9470756
Chromosome Location	chr6:12023883-12023884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12011120..12013823-chr6:12023572..12025777,2	MCF-7	breast:
2	chr6:12021722..12024771-chr6:12025017..12026580,3	K562	blood:
3	chr6:12023578..12025547-chr6:12049523..12051378,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10947708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11751417	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753078	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11963539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967367	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1409287	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574343	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs186017	0.83[ASN][1000 genomes]
rs209800	0.83[ASN][1000 genomes]
rs209805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs209806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs209807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs209809	0.83[ASN][1000 genomes]
rs57760403	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395280	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62395444	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395445	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395447	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395448	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395449	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395450	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395451	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62398268	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398271	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398272	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6907381	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72824063	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72824066	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72826014	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741598	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748578	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753800	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762263	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462320	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462323	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462326	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462327	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462328	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462335	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9462336	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462338	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462342	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462365	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462366	0.89[ASN][1000 genomes]
rs9462378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470618	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470623	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470625	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470627	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470629	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470647	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470649	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470652	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9470673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470698	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470699	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470713	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470718	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470720	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470721	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470749	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470750	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470752	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470754	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470768	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs9470780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470793	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12014000-12031800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12014400-12024800	Weak transcription	Stomach Mucosa	stomach
4	chr6:12014400-12030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:12014600-12032000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:12015200-12024600	Weak transcription	NHDF-Ad	bronchial
7	chr6:12015400-12025000	Weak transcription	Small Intestine	intestine
8	chr6:12015400-12025400	Strong transcription	Liver	Liver
9	chr6:12015400-12029200	Weak transcription	Brain Anterior Caudate	brain
10	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
11	chr6:12017800-12024800	Weak transcription	NH-A	brain
12	chr6:12017800-12025000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:12017800-12025000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:12017800-12027800	Weak transcription	Left Ventricle	heart
15	chr6:12017800-12029400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
17	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
19	chr6:12018000-12024800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:12018400-12024600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:12018600-12024800	Weak transcription	Colonic Mucosa	Colon
23	chr6:12018600-12026400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:12018600-12031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
27	chr6:12018800-12024800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:12018800-12030200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:12019000-12024800	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:12019000-12025200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:12019200-12025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:12019400-12024600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:12019400-12027000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:12019600-12024600	Weak transcription	HMEC	breast
36	chr6:12019600-12025000	Weak transcription	Gastric	stomach
37	chr6:12019600-12028400	Weak transcription	Brain Germinal Matrix	brain
38	chr6:12020600-12024000	Weak transcription	Fetal Heart	heart
39	chr6:12020600-12024600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:12020800-12024600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:12020800-12024800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:12020800-12024800	Weak transcription	Osteobl	bone
43	chr6:12020800-12025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:12020800-12025000	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:12020800-12025000	Weak transcription	Right Atrium	heart
46	chr6:12020800-12026600	Weak transcription	HepG2	liver
47	chr6:12020800-12027800	Weak transcription	Pancreas	Pancrea
48	chr6:12020800-12031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:12020800-12031400	Weak transcription	Esophagus	oesophagus
50	chr6:12020800-12031400	Weak transcription	Lung	lung

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