Variant report

Variant	rs209805
Chromosome Location	chr6:11966063-11966064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11870281..11872395-chr6:11964255..11966450,2	K562	blood:
2	chr6:11964811..11966583-chr6:11966966..11969534,2	MCF-7	breast:
3	chr6:11965258..11967128-chr6:12011147..12013128,2	K562	blood:
4	chr6:11965628..11968587-chr6:12011147..12013946,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10947708	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1117047	0.91[ASN][1000 genomes]
rs11751417	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753078	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11963539	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11967367	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1326143	0.91[ASN][1000 genomes]
rs1326144	0.91[ASN][1000 genomes]
rs1359618	0.91[ASN][1000 genomes]
rs1409287	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16872095	0.82[LWK][hapmap]
rs172353	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs186017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209800	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209804	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209806	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4357131	0.91[ASN][1000 genomes]
rs4714062	0.96[ASN][1000 genomes]
rs4714063	0.96[ASN][1000 genomes]
rs57760403	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395280	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62395444	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62395445	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62395447	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395448	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395449	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395450	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395451	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62398268	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398271	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398272	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6907381	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6920727	0.96[ASN][1000 genomes]
rs6927024	0.96[ASN][1000 genomes]
rs6941983	0.96[ASN][1000 genomes]
rs72824063	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72824066	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72826014	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7741598	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7748578	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7753800	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7762263	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7765463	0.91[ASN][1000 genomes]
rs926666	0.91[ASN][1000 genomes]
rs926667	0.91[ASN][1000 genomes]
rs9368995	0.91[ASN][1000 genomes]
rs9462320	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462323	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462325	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462326	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9462327	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462328	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462335	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462336	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462338	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462342	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462365	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462366	0.89[ASN][1000 genomes]
rs9462378	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9462379	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9462407	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9462408	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9470570	0.91[ASN][1000 genomes]
rs9470618	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470623	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470625	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470627	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470629	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470631	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470638	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470643	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470647	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470649	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470652	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9470673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470682	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470692	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470698	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470699	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470713	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470718	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470720	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9470721	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9470741	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470749	0.82[AMR][1000 genomes]
rs9470750	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470752	1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470754	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9470768	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9470780	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470793	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470808	1.00[CHB][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9470821	1.00[CHB][hapmap];0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs209805	C6orf218	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961200-11966200	Enhancers	K562	blood
2	chr6:11961400-11972600	Weak transcription	Lung	lung
3	chr6:11963600-11966600	Enhancers	Fetal Intestine Large	intestine
4	chr6:11964200-11969200	Weak transcription	Aorta	Aorta
5	chr6:11964600-11966400	Enhancers	Fetal Intestine Small	intestine
6	chr6:11965400-11966400	Bivalent Enhancer	HepG2	liver
7	chr6:11965800-11968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:11966000-11968400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:11966000-11971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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