Variant report

Variant	rs16872095
Chromosome Location	chr6:11945778-11945779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11944959..11946761-chr6:12016853..12018812,2	K562	blood:
2	chr6:11930636..11932967-chr6:11944215..11946007,3	K562	blood:
3	chr6:11943368..11946151-chr6:11992060..11994891,2	K562	blood:
4	chr6:11922270..11924751-chr6:11942843..11945942,3	K562	blood:
5	chr6:11942314..11946137-chr6:11947181..11949367,4	K562	blood:

Variant related genes	Relation type
ENSG00000225102	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11756601	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11962157	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964096	0.90[ASN][1000 genomes]
rs11965341	0.86[ASN][1000 genomes]
rs11966682	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11968174	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968421	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1205846	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1205852	0.93[ASN][1000 genomes]
rs1205853	0.93[ASN][1000 genomes]
rs1205854	0.93[ASN][1000 genomes]
rs1205855	0.93[ASN][1000 genomes]
rs1205856	0.93[ASN][1000 genomes]
rs1205857	0.93[ASN][1000 genomes]
rs1205859	0.93[ASN][1000 genomes]
rs1205860	0.93[ASN][1000 genomes]
rs1205861	0.93[ASN][1000 genomes]
rs1205863	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205873	0.93[ASN][1000 genomes]
rs1205874	0.88[ASN][1000 genomes]
rs1205875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205876	0.93[ASN][1000 genomes]
rs1205877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205879	0.93[ASN][1000 genomes]
rs1205880	0.93[ASN][1000 genomes]
rs1205881	0.93[ASN][1000 genomes]
rs1205882	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205883	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205884	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205887	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205889	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1205890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1205891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16872104	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs209805	0.82[LWK][hapmap]
rs209806	0.82[LWK][hapmap]
rs209812	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs209813	0.90[ASN][1000 genomes]
rs209814	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs209815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs209816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs55968946	0.93[ASN][1000 genomes]
rs58311216	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58522477	0.83[ASN][1000 genomes]
rs59552060	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62395404	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62395407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395428	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714493	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7740251	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs864245	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs960414	0.93[ASN][1000 genomes]
rs999823	0.85[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs999824	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2427616	chr6:11945409-11946714	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11944600-11946800	Weak transcription	K562	blood
2	chr6:11945200-11946000	Enhancers	Liver	Liver

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