Variant report

Variant	rs714493
Chromosome Location	chr6:11920763-11920764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11920219..11922474-chr6:11929481..11931505,4	K562	blood:
3	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
4	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
5	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
6	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
7	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:
8	chr6:11920056..11922933-chr6:11926115..11927726,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP1-3	chr6:11920596-11920977	XLOC_005172
2	lnc-HIVEP1-3	chr6:11920595-11921125	NONHSAT107767

No data

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11756601	0.90[ASN][1000 genomes]
rs11962157	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964096	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11965341	0.93[ASN][1000 genomes]
rs11966682	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11968174	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11968421	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1205846	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1205852	0.87[ASN][1000 genomes]
rs1205853	0.87[ASN][1000 genomes]
rs1205854	0.87[ASN][1000 genomes]
rs1205855	0.87[ASN][1000 genomes]
rs1205856	0.87[ASN][1000 genomes]
rs1205857	0.87[ASN][1000 genomes]
rs1205859	0.87[ASN][1000 genomes]
rs1205860	0.87[ASN][1000 genomes]
rs1205861	0.87[ASN][1000 genomes]
rs1205863	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205864	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205865	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205866	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205867	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205871	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205872	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205873	0.87[ASN][1000 genomes]
rs1205874	0.81[ASN][1000 genomes]
rs1205875	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205876	0.87[ASN][1000 genomes]
rs1205877	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205879	0.87[ASN][1000 genomes]
rs1205880	0.87[ASN][1000 genomes]
rs1205881	0.87[ASN][1000 genomes]
rs1205882	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205883	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205884	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205887	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205888	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205889	0.87[ASN][1000 genomes]
rs1205890	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1205891	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16872095	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872104	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs209812	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs209813	0.83[ASN][1000 genomes]
rs209814	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs209815	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs209816	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs55968946	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58311216	0.90[ASN][1000 genomes]
rs59552060	0.90[ASN][1000 genomes]
rs62395404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395407	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62395428	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7740251	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs864245	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs960414	0.87[ASN][1000 genomes]
rs999823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
2	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
8	chr6:11918400-11922400	Enhancers	NHEK	skin
9	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:11918600-11921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:11919000-11921200	Weak transcription	Small Intestine	intestine
12	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:11919400-11920800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:11919400-11921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:11919400-11921200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:11919400-11921200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:11919400-11921200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:11919400-11921200	Weak transcription	Right Ventricle	heart
19	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:11919400-11922200	Enhancers	Hela-S3	cervix
21	chr6:11919400-11922200	Enhancers	NHDF-Ad	bronchial
22	chr6:11919400-11922200	Enhancers	NHLF	lung
23	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:11919600-11920800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:11919600-11921000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:11919800-11920800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:11919800-11920800	Weak transcription	Fetal Intestine Large	intestine
30	chr6:11919800-11920800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:11919800-11920800	Weak transcription	HSMM	muscle
32	chr6:11919800-11920800	Weak transcription	NH-A	brain
33	chr6:11919800-11920800	Weak transcription	Osteobl	bone
34	chr6:11919800-11921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:11919800-11921200	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:11919800-11921200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:11919800-11921200	Enhancers	K562	blood
38	chr6:11920200-11921000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:11920200-11921200	Weak transcription	Fetal Lung	lung
40	chr6:11920200-11921200	Weak transcription	Fetal Stomach	stomach
41	chr6:11920400-11921200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:11920400-11921600	Enhancers	Colon Smooth Muscle	Colon
43	chr6:11920400-11921800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:11920600-11921400	Enhancers	Placenta	Placenta
45	chr6:11920600-11921400	Enhancers	A549	lung
46	chr6:11920600-11921600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:11920600-11922200	Enhancers	Placenta Amnion	Placenta Amnion

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