Variant report

Variant	rs11966682
Chromosome Location	chr6:11928807-11928808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
2	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:
3	chr6:11909743..11911670-chr6:11928243..11930233,2	K562	blood:
4	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
5	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
6	chr6:11928396..11930237-chr6:11946465..11949444,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11756601	0.90[ASN][1000 genomes]
rs11962157	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11964096	0.84[ASN][1000 genomes]
rs11965341	0.81[ASN][1000 genomes]
rs11968174	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11968421	0.84[ASN][1000 genomes]
rs1205846	0.84[ASN][1000 genomes]
rs1205852	0.87[ASN][1000 genomes]
rs1205853	0.87[ASN][1000 genomes]
rs1205854	0.87[ASN][1000 genomes]
rs1205855	0.87[ASN][1000 genomes]
rs1205856	0.87[ASN][1000 genomes]
rs1205857	0.87[ASN][1000 genomes]
rs1205859	0.87[ASN][1000 genomes]
rs1205860	0.87[ASN][1000 genomes]
rs1205861	0.87[ASN][1000 genomes]
rs1205863	0.87[ASN][1000 genomes]
rs1205864	0.87[ASN][1000 genomes]
rs1205865	0.87[ASN][1000 genomes]
rs1205866	0.87[ASN][1000 genomes]
rs1205867	0.87[ASN][1000 genomes]
rs1205871	0.87[ASN][1000 genomes]
rs1205872	0.87[ASN][1000 genomes]
rs1205873	0.87[ASN][1000 genomes]
rs1205874	0.82[ASN][1000 genomes]
rs1205875	0.87[ASN][1000 genomes]
rs1205876	0.87[ASN][1000 genomes]
rs1205877	0.87[ASN][1000 genomes]
rs1205879	0.87[ASN][1000 genomes]
rs1205880	0.87[ASN][1000 genomes]
rs1205881	0.87[ASN][1000 genomes]
rs1205882	0.87[ASN][1000 genomes]
rs1205883	0.87[ASN][1000 genomes]
rs1205884	0.87[ASN][1000 genomes]
rs1205887	0.87[ASN][1000 genomes]
rs1205888	0.87[ASN][1000 genomes]
rs1205889	0.87[ASN][1000 genomes]
rs1205890	0.87[ASN][1000 genomes]
rs1205891	0.87[ASN][1000 genomes]
rs16872095	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16872104	0.90[ASN][1000 genomes]
rs209812	0.84[ASN][1000 genomes]
rs209813	0.84[ASN][1000 genomes]
rs209814	0.87[ASN][1000 genomes]
rs209815	0.87[ASN][1000 genomes]
rs209816	0.87[ASN][1000 genomes]
rs55968946	0.87[ASN][1000 genomes]
rs58311216	0.90[ASN][1000 genomes]
rs59552060	0.90[ASN][1000 genomes]
rs62395404	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62395407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62395428	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs714493	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7740251	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs864245	0.87[ASN][1000 genomes]
rs960414	0.87[ASN][1000 genomes]
rs999823	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs999824	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11923400-11929600	Weak transcription	Fetal Lung	lung
4	chr6:11924000-11929600	Weak transcription	K562	blood
5	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell

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