Variant report

Variant	rs11756601
Chromosome Location	chr6:11938805-11938806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11937988..11940263-chr6:11954946..11957643,2	K562	blood:
2	chr6:11937603..11940541-chr6:11940588..11943697,3	K562	blood:
3	chr6:11938325..11940429-chr6:12012405..12015176,2	K562	blood:
4	chr6:11937603..11940636-chr6:11941347..11943697,3	K562	blood:
5	chr6:11913765..11915487-chr6:11938555..11940311,2	K562	blood:
6	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
7	chr6:11913987..11915505-chr6:11938167..11940311,2	K562	blood:
8	chr6:11938241..11940254-chr6:12007996..12010839,2	K562	blood:
9	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11962157	0.86[ASN][1000 genomes]
rs11964096	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11965341	0.83[ASN][1000 genomes]
rs11966682	0.90[ASN][1000 genomes]
rs11968174	0.97[ASN][1000 genomes]
rs11968421	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1205846	0.87[ASN][1000 genomes]
rs1205852	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205853	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205854	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205855	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205856	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205857	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205859	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205860	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205861	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205863	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205864	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205865	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205866	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205867	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205871	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205872	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205873	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205874	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1205875	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205876	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205877	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205879	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205880	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205881	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205882	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205883	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205884	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205887	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205888	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205889	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205890	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205891	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16872095	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16872104	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209812	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209813	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209814	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209815	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209816	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55968946	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58311216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58522477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59552060	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395404	0.90[ASN][1000 genomes]
rs62395407	0.97[ASN][1000 genomes]
rs62395428	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs714493	0.90[ASN][1000 genomes]
rs7740251	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs864245	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs960414	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs999823	0.90[ASN][1000 genomes]
rs999824	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519516	chr6:11938672-11942371	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11937800-11940200	Weak transcription	Thymus	Thymus
2	chr6:11937800-11940600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:11938000-11939000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:11938000-11939200	Flanking Active TSS	K562	blood
5	chr6:11938200-11939200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:11938400-11939000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:11938400-11939000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:11938400-11939000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:11938400-11939000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:11938400-11939000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:11938400-11939000	Enhancers	Brain Germinal Matrix	brain
12	chr6:11938400-11939000	Enhancers	Brain Hippocampus Middle	brain
13	chr6:11938400-11939000	Enhancers	NHLF	lung
14	chr6:11938400-11939200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:11938400-11939200	Enhancers	Liver	Liver
16	chr6:11938400-11939400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:11938600-11939000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:11938600-11939000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:11938600-11939000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:11938600-11939000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:11938600-11939000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:11938600-11939000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:11938600-11939000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:11938600-11939000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:11938600-11939000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:11938600-11939000	Enhancers	Adipose Nuclei	Adipose
27	chr6:11938600-11939000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr6:11938600-11939000	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr6:11938600-11939000	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr6:11938600-11939000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:11938600-11939000	Enhancers	Fetal Lung	lung
32	chr6:11938600-11939000	Enhancers	Ovary	ovary
33	chr6:11938600-11939000	Enhancers	Psoas Muscle	Psoas
34	chr6:11938600-11939000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:11938600-11939000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:11938600-11939000	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:11938600-11939000	Flanking Active TSS	HUVEC	blood vessel
38	chr6:11938600-11939000	Flanking Active TSS	Osteobl	bone
39	chr6:11938600-11939200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:11938600-11939200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:11938600-11939200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:11938600-11939200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr6:11938600-11939200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:11938600-11939200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:11938600-11939200	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr6:11938600-11939200	Enhancers	Pancreas	Pancrea
47	chr6:11938600-11939200	Enhancers	Right Atrium	heart
48	chr6:11938600-11940200	Enhancers	GM12878-XiMat	blood
49	chr6:11938800-11939000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:11938800-11939000	Enhancers	Brain Anterior Caudate	brain

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