Variant report

Variant	rs11963539
Chromosome Location	chr6:11969231-11969232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11966998..11969837-chr6:12006330..12008967,3	K562	blood:
3	chr6:11964811..11966583-chr6:11966966..11969534,2	MCF-7	breast:
4	chr6:11963212..11964743-chr6:11967263..11969893,2	K562	blood:
5	chr6:11942682..11944906-chr6:11968224..11970350,2	K562	blood:
6	chr6:11969121..11970622-chr6:12013572..12016393,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10947708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1117047	0.87[ASN][1000 genomes]
rs11751417	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753078	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967367	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326143	0.87[ASN][1000 genomes]
rs1326144	0.87[ASN][1000 genomes]
rs1359618	0.87[ASN][1000 genomes]
rs1409287	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs172353	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs186017	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs209800	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs209804	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs209805	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs209806	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs209807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs209809	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4357131	0.87[ASN][1000 genomes]
rs4714062	0.91[ASN][1000 genomes]
rs4714063	0.91[ASN][1000 genomes]
rs57760403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395280	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395444	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395445	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395447	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395448	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395449	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395450	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395451	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62398268	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62398271	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62398272	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6907381	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920727	0.91[ASN][1000 genomes]
rs6927024	0.91[ASN][1000 genomes]
rs6941983	0.91[ASN][1000 genomes]
rs72824063	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72824066	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826014	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7741598	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7748578	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7753800	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7762263	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765463	0.87[ASN][1000 genomes]
rs926666	0.87[ASN][1000 genomes]
rs926667	0.87[ASN][1000 genomes]
rs9368995	0.87[ASN][1000 genomes]
rs9462320	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462323	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462327	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462328	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462335	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462336	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462338	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462342	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462365	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462366	0.93[ASN][1000 genomes]
rs9462378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470570	0.87[ASN][1000 genomes]
rs9470618	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470623	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470625	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470627	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470629	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470647	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470649	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470652	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9470673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470698	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470699	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470713	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470718	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470720	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470721	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470749	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470750	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470752	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470754	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470768	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9470780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470793	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961400-11972600	Weak transcription	Lung	lung
2	chr6:11966000-11971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:11967400-11969400	Enhancers	NHEK	skin
5	chr6:11968000-11969600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:11968200-11969800	Enhancers	Primary B cells from cord blood	blood
7	chr6:11968400-11969400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:11968400-11969400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:11968400-11969400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:11968400-11969600	Enhancers	Fetal Heart	heart
11	chr6:11968400-11970000	Enhancers	NHDF-Ad	bronchial
12	chr6:11968600-11969400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:11968600-11969400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:11968600-11969400	Enhancers	Fetal Stomach	stomach
15	chr6:11968600-11969400	Enhancers	Pancreas	Pancrea
16	chr6:11968600-11969400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:11968600-11969600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:11968600-11969600	Flanking Active TSS	K562	blood
19	chr6:11968600-11969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:11968600-11970000	Enhancers	Left Ventricle	heart
21	chr6:11968600-11971000	Weak transcription	HSMM	muscle
22	chr6:11968800-11969400	Enhancers	Colon Smooth Muscle	Colon
23	chr6:11968800-11969400	Enhancers	GM12878-XiMat	blood
24	chr6:11968800-11969600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:11968800-11969800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:11968800-11969800	Enhancers	HSMMtube	muscle
27	chr6:11969000-11969400	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:11969000-11969400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:11969000-11969400	Active TSS	Rectal Smooth Muscle	rectum
30	chr6:11969000-11969600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:11969000-11969800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:11969000-11969800	Flanking Active TSS	Osteobl	bone
33	chr6:11969000-11970000	Enhancers	NH-A	brain
34	chr6:11969200-11969400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:11969200-11969400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:11969200-11969400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:11969200-11969400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:11969200-11969400	Enhancers	Ovary	ovary
39	chr6:11969200-11969400	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr6:11969200-11969400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:11969200-11969400	Enhancers	HUVEC	blood vessel
42	chr6:11969200-11969400	Flanking Active TSS	NHLF	lung
43	chr6:11969200-11969600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:11969200-11969600	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr6:11969200-11969600	Enhancers	Aorta	Aorta
46	chr6:11969200-11969600	Enhancers	Brain Anterior Caudate	brain
47	chr6:11969200-11969600	Enhancers	Psoas Muscle	Psoas
48	chr6:11969200-11969600	Active TSS	Stomach Smooth Muscle	stomach
49	chr6:11969200-11969800	Active TSS	Right Atrium	heart

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