Variant report

Variant	rs209800
Chromosome Location	chr6:11961123-11961124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11845664..11847912-chr6:11959676..11961554,2	K562	blood:
2	chr6:11959092..11961876-chr6:11972150..11975452,3	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10947708	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1117047	0.91[ASN][1000 genomes]
rs11751417	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753078	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11963539	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11967367	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1326143	0.91[ASN][1000 genomes]
rs1326144	0.91[ASN][1000 genomes]
rs1359618	0.91[ASN][1000 genomes]
rs1409287	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16872095	0.82[LWK][hapmap]
rs172353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs186017	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209804	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209805	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209806	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209809	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4357131	0.91[ASN][1000 genomes]
rs4714062	0.96[ASN][1000 genomes]
rs4714063	0.96[ASN][1000 genomes]
rs57760403	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395280	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62395444	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62395445	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62395447	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395448	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395449	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395450	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395451	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62398268	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398271	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398272	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6907381	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6920727	0.96[ASN][1000 genomes]
rs6927024	0.96[ASN][1000 genomes]
rs6941983	0.96[ASN][1000 genomes]
rs72824063	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72824066	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72826014	0.87[ASN][1000 genomes]
rs7741598	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7748578	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7753800	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7762263	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7765463	0.91[ASN][1000 genomes]
rs926666	0.91[ASN][1000 genomes]
rs926667	0.91[ASN][1000 genomes]
rs9368995	0.91[ASN][1000 genomes]
rs9462320	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462323	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462325	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462326	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9462327	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462328	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462335	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462336	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462338	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462342	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9462365	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9462366	0.89[ASN][1000 genomes]
rs9462378	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs9462379	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9462407	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9462408	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9470570	0.91[ASN][1000 genomes]
rs9470618	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470623	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470625	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470627	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470629	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470631	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470638	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470643	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470649	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470652	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9470673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470682	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470692	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470698	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470699	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470713	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470718	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470720	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9470721	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9470741	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470750	0.83[ASN][1000 genomes]
rs9470752	1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs9470754	0.83[ASN][1000 genomes]
rs9470756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9470768	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9470780	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470793	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470808	1.00[CHB][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9470821	1.00[CHB][hapmap];0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs209800	C6orf218	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11959600-11961200	Weak transcription	K562	blood
2	chr6:11960800-11961200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:11960800-11961400	Enhancers	Lung	lung
4	chr6:11961000-11961400	Enhancers	NHEK	skin

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