Variant report

Variant	rs1205869
Chromosome Location	chr6:11944441-11944442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11942579..11944738-chr6:11957647..11960458,2	K562	blood:
2	chr6:11942682..11944906-chr6:11968224..11970350,2	K562	blood:
3	chr6:11943808..11945567-chr6:11950046..11952634,2	K562	blood:
4	chr6:11930636..11932967-chr6:11944215..11946007,3	K562	blood:
5	chr6:11943368..11946151-chr6:11992060..11994891,2	K562	blood:
6	chr6:11922270..11924751-chr6:11942843..11945942,3	K562	blood:
7	chr6:11943872..11945567-chr6:11954478..11956491,2	K562	blood:
8	chr6:11942314..11946137-chr6:11947181..11949367,4	K562	blood:
9	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1205848	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1205868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205886	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1536305	0.80[ASN][1000 genomes]
rs169715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28511	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909793	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462257	0.80[ASN][1000 genomes]
rs9470484	0.80[ASN][1000 genomes]
rs9470753	0.84[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11942400-11945400	Enhancers	Fetal Intestine Small	intestine
2	chr6:11942400-11945600	Enhancers	Fetal Intestine Large	intestine
3	chr6:11942800-11944600	Enhancers	Liver	Liver
4	chr6:11943000-11944600	Enhancers	K562	blood
5	chr6:11943400-11944800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:11943600-11944800	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links