Variant report

Variant	rs56311201
Chromosome Location	chr11:65534046-65534047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1079185	1.00[AMR][1000 genomes]
rs11568297	1.00[AMR][1000 genomes]
rs11823278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825475	1.00[AMR][1000 genomes]
rs11827943	1.00[AMR][1000 genomes]
rs4645925	1.00[AMR][1000 genomes]
rs56070121	0.95[AFR][1000 genomes]
rs56221247	0.97[AFR][1000 genomes]
rs57096718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58260755	0.97[AFR][1000 genomes]
rs58661068	1.00[AMR][1000 genomes]
rs61732727	1.00[AMR][1000 genomes]
rs7101552	1.00[AMR][1000 genomes]
rs7116571	1.00[AMR][1000 genomes]
rs7118008	0.83[AMR][1000 genomes]
rs7121450	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65530400-65537000	Weak transcription	Primary B cells from cord blood	blood
2	chr11:65532200-65535200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:65532400-65542200	Weak transcription	A549	lung
4	chr11:65532400-65542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:65532600-65544000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:65533000-65538000	Weak transcription	HepG2	liver
7	chr11:65533000-65542000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:65533600-65534400	Enhancers	NHDF-Ad	bronchial
9	chr11:65533600-65543600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:65534000-65534200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:65534000-65534200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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