Variant report

Variant	rs58260755
Chromosome Location	chr11:65540350-65540351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65478329..65480745-chr11:65539955..65542760,2	K562	blood:
2	chr11:65540229..65542418-chr11:65625485..65628418,2	K562	blood:
3	chr11:65477516..65483320-chr11:65539054..65543224,6	MCF-7	breast:
4	chr11:65497654..65499600-chr11:65538444..65540594,2	K562	blood:
5	chr11:65478022..65480745-chr11:65539955..65542379,2	K562	blood:
6	chr11:65494883..65497549-chr11:65540068..65542666,2	K562	blood:

Variant related genes	Relation type
ENSG00000172977	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11823278	0.97[AFR][1000 genomes]
rs11825070	0.83[AMR][1000 genomes]
rs11826647	0.83[AMR][1000 genomes]
rs56070121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56221247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56311201	0.97[AFR][1000 genomes]
rs56335403	0.83[AMR][1000 genomes]
rs57096718	0.97[AFR][1000 genomes]
rs60917081	0.83[AMR][1000 genomes]
rs7121450	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65532400-65542200	Weak transcription	A549	lung
2	chr11:65532400-65542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:65532600-65544000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:65533000-65542000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:65533600-65543600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:65534200-65544600	Weak transcription	Osteobl	bone
7	chr11:65534400-65542200	Enhancers	Placenta	Placenta
8	chr11:65534400-65542200	Weak transcription	NHDF-Ad	bronchial
9	chr11:65534400-65543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:65536000-65542200	Weak transcription	Hela-S3	cervix
11	chr11:65536400-65541400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:65537000-65543800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:65537400-65542400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:65537400-65542800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:65537400-65543000	Weak transcription	Primary T cells from cord blood	blood
16	chr11:65537400-65544200	Weak transcription	NHLF	lung
17	chr11:65537400-65544400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:65537400-65544400	Weak transcription	Dnd41	blood
19	chr11:65537400-65544600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:65537400-65544600	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:65537400-65544600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:65537400-65544800	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:65537400-65545200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:65537400-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:65537400-65546600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:65537600-65542400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:65537600-65542600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:65537600-65544200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:65537600-65545000	Weak transcription	Aorta	Aorta
30	chr11:65537600-65546600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:65537800-65541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:65537800-65541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:65537800-65543800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:65537800-65543800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:65537800-65546800	Weak transcription	K562	blood
36	chr11:65538000-65540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:65538200-65542600	Weak transcription	HMEC	breast
38	chr11:65538800-65540600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:65538800-65543800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:65538800-65544400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:65539000-65541800	Weak transcription	Pancreas	Pancrea
42	chr11:65539000-65542200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:65539000-65542400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:65539000-65542800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:65539000-65544200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:65539000-65544200	Weak transcription	Gastric	stomach
47	chr11:65539000-65544400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:65539200-65540400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:65539200-65542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:65539200-65542200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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