Variant report

Variant	rs56318309
Chromosome Location	chr4:21803590-21803591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10006961	0.88[ASN][1000 genomes]
rs10017728	0.90[ASN][1000 genomes]
rs10034770	0.91[ASN][1000 genomes]
rs10433823	0.83[ASN][1000 genomes]
rs10805229	0.91[ASN][1000 genomes]
rs12500976	0.88[ASN][1000 genomes]
rs12501059	0.87[ASN][1000 genomes]
rs13108475	0.91[ASN][1000 genomes]
rs13109215	0.86[ASN][1000 genomes]
rs13147399	0.84[ASN][1000 genomes]
rs1398830	0.83[ASN][1000 genomes]
rs17507672	0.93[ASN][1000 genomes]
rs1841189	0.91[ASN][1000 genomes]
rs2175783	0.87[ASN][1000 genomes]
rs2323127	0.88[ASN][1000 genomes]
rs28635318	0.91[ASN][1000 genomes]
rs28726212	0.88[ASN][1000 genomes]
rs35259948	0.88[ASN][1000 genomes]
rs4470613	0.86[ASN][1000 genomes]
rs56703551	0.93[ASN][1000 genomes]
rs6448092	0.91[ASN][1000 genomes]
rs6448093	0.91[ASN][1000 genomes]
rs6848840	0.90[ASN][1000 genomes]
rs7654180	0.91[ASN][1000 genomes]
rs7671494	0.91[ASN][1000 genomes]
rs7696243	0.92[ASN][1000 genomes]
rs7696754	0.92[ASN][1000 genomes]
rs921380	0.91[ASN][1000 genomes]
rs925574	0.86[ASN][1000 genomes]
rs925575	0.86[ASN][1000 genomes]
rs966922	0.91[ASN][1000 genomes]
rs9985790	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21803000-21803800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:21803000-21803800	Enhancers	HUVEC	blood vessel
3	chr4:21803000-21804800	Enhancers	HMEC	breast
4	chr4:21803000-21805000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:21803000-21805000	Enhancers	HSMMtube	muscle
6	chr4:21803000-21805200	Enhancers	Osteobl	bone
7	chr4:21803200-21803800	Enhancers	NH-A	brain
8	chr4:21803400-21803600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:21803400-21805000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:21803400-21805200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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