Variant report

Variant	rs10017728
Chromosome Location	chr4:21804258-21804259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10006961	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10009391	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes]
rs10011983	0.83[CHB][hapmap]
rs10012055	0.86[CHB][hapmap]
rs10028154	0.85[CHB][hapmap]
rs10034770	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10433823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10805229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938864	0.81[JPT][hapmap]
rs11736403	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11930660	0.86[CHB][hapmap]
rs12054593	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12500976	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12501059	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12501226	0.86[CHB][hapmap]
rs12508810	0.93[EUR][1000 genomes]
rs12509958	0.85[CHB][hapmap]
rs12513185	0.84[CHB][hapmap]
rs13102807	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13107915	0.86[CHB][hapmap]
rs13108475	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13109215	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13122692	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13122849	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs13143995	0.81[JPT][hapmap]
rs13147399	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13148604	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1398830	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1450729	0.85[CHB][hapmap]
rs1450730	0.86[CHB][hapmap]
rs1450731	0.86[CHB][hapmap]
rs1459270	0.86[CHB][hapmap]
rs1459271	0.86[CHB][hapmap]
rs1459273	0.86[CHB][hapmap]
rs1459281	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs1513572	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1530816	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs16871968	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17507672	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824366	0.86[CHB][hapmap]
rs1824367	0.86[CHB][hapmap]
rs1827592	0.86[CHB][hapmap]
rs1839525	0.86[CHB][hapmap]
rs1841181	0.86[CHB][hapmap]
rs1841189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1847425	0.90[CHB][hapmap]
rs1868744	0.86[CHB][hapmap]
rs1913327	0.92[EUR][1000 genomes]
rs2017960	0.85[CHB][hapmap]
rs2045555	0.85[CHB][hapmap]
rs2122591	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2175783	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2323127	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2323160	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28600835	0.82[AMR][1000 genomes]
rs28635318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28726212	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35259948	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35998502	0.86[EUR][1000 genomes]
rs3864177	0.85[CHB][hapmap]
rs4101629	0.86[CHB][hapmap]
rs4377576	0.82[GIH][hapmap]
rs4434239	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4470613	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4530617	0.86[CHB][hapmap]
rs4550912	0.86[CHB][hapmap]
rs4696984	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4697241	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4697244	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56318309	0.90[ASN][1000 genomes]
rs56703551	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6414727	0.86[CHB][hapmap]
rs6448074	0.85[CHB][hapmap]
rs6448084	0.86[CHB][hapmap]
rs6448092	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6448093	0.80[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6448098	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6448099	0.81[JPT][hapmap]
rs6838654	0.85[CHB][hapmap]
rs6838747	0.86[CHB][hapmap]
rs6848840	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs715840	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs717531	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs7654180	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7668222	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs7671494	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7696243	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696754	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697475	0.86[CHB][hapmap]
rs868745	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs896122	0.86[CHB][hapmap]
rs921380	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925574	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs925575	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs957196	0.92[CEU][hapmap];0.82[GIH][hapmap];0.85[EUR][1000 genomes]
rs966922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs987045	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs9985790	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21803000-21804800	Enhancers	HMEC	breast
2	chr4:21803000-21805000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:21803000-21805000	Enhancers	HSMMtube	muscle
4	chr4:21803000-21805200	Enhancers	Osteobl	bone
5	chr4:21803400-21805000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:21803400-21805200	Enhancers	HSMM	muscle
7	chr4:21803600-21804400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:21803600-21804600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:21803600-21804800	Enhancers	NHEK	skin
10	chr4:21803800-21804800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:21803800-21805000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:21803800-21806000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:21804200-21805000	Enhancers	NH-A	brain
14	chr4:21804200-21805200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:21804200-21805400	Enhancers	HUVEC	blood vessel

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