Variant report

Variant	rs1459281
Chromosome Location	chr4:21812616-21812617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10006785	0.87[EUR][1000 genomes]
rs10016234	0.87[EUR][1000 genomes]
rs10017728	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs10033249	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10034770	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs10516402	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10805229	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs10938858	0.84[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942219	0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944786	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12498561	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12503736	0.84[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513218	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12642007	0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12642061	0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12642992	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12643557	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643656	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644852	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12649356	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12650029	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650691	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13109215	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs13122692	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs13122849	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1398833	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1398834	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1459277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1459278	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1513572	0.92[CEU][hapmap]
rs1530816	0.81[CHB][hapmap]
rs168625	0.84[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1813583	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1839523	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1841185	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1841186	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1968778	0.84[CHB][hapmap]
rs2007971	0.80[CEU][hapmap];0.88[CHB][hapmap]
rs2012445	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2044804	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2044805	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2122591	0.81[CEU][hapmap]
rs2122592	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2175783	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs2323160	0.81[CEU][hapmap]
rs28409267	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33939152	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34226435	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34384769	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34580494	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34825575	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34833395	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34903275	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs360687	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360688	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360700	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282162	0.83[CHB][hapmap]
rs4377576	0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4411977	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4434239	0.92[CEU][hapmap]
rs4563486	0.84[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697241	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs4697244	0.84[CEU][hapmap]
rs55777248	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6448093	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6448098	0.85[CEU][hapmap]
rs6840539	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs715840	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs73256549	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256551	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256552	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256555	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256556	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256557	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256558	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256559	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256561	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73256581	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73256595	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73256601	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73258503	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7668222	0.84[CEU][hapmap]
rs7696243	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs925574	0.92[CEU][hapmap]
rs957196	0.84[CEU][hapmap]
rs966045	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs966922	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs9760244	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9994945	0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21805000-21813200	Weak transcription	HSMMtube	muscle
2	chr4:21812400-21813600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:21812400-21814000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:21812600-21813800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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