Variant report

Variant	rs12650691
Chromosome Location	chr4:21846982-21846983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-2	chr4:21844963-21854811	UM9-5
2	lnc-GPR125-2	chr4:21844964-21854811	NONHSAT095745

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10033249	0.83[EUR][1000 genomes]
rs1040036	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516402	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10938858	0.84[EUR][1000 genomes]
rs11942219	0.83[EUR][1000 genomes]
rs11944786	0.82[AMR][1000 genomes]
rs12503736	0.84[EUR][1000 genomes]
rs12504827	0.86[EUR][1000 genomes]
rs12512316	0.86[EUR][1000 genomes]
rs12642007	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12642061	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12642992	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12643557	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12643656	0.84[EUR][1000 genomes]
rs12644852	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12650029	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1349383	0.89[EUR][1000 genomes]
rs1398833	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1398834	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1459277	0.84[EUR][1000 genomes]
rs1459278	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1459281	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs168625	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17569369	0.86[EUR][1000 genomes]
rs1813583	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1839523	0.84[EUR][1000 genomes]
rs1841185	0.84[EUR][1000 genomes]
rs1841186	0.84[EUR][1000 genomes]
rs2012445	0.83[EUR][1000 genomes]
rs2044804	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2044805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2063656	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063657	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063658	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28409267	0.83[EUR][1000 genomes]
rs33939152	0.81[EUR][1000 genomes]
rs34226435	0.83[EUR][1000 genomes]
rs34580494	0.81[EUR][1000 genomes]
rs34825575	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34833395	0.84[EUR][1000 genomes]
rs34903275	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs360687	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs360688	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs360700	0.83[EUR][1000 genomes]
rs4377576	0.81[EUR][1000 genomes]
rs4411977	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4563486	0.84[EUR][1000 genomes]
rs55777248	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256549	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256551	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256552	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256556	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256557	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256558	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256559	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256561	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256572	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73256581	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73256595	0.83[AMR][1000 genomes]
rs73256598	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256601	0.82[AMR][1000 genomes]
rs73258503	0.83[AMR][1000 genomes]
rs966045	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9994945	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21840800-21849600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21846000-21847200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:21846600-21848000	Enhancers	Osteobl	bone
4	chr4:21846600-21848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:21846800-21848000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:21846800-21848000	Enhancers	Muscle Satellite Cultured Cells	--

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