Variant report

Variant	rs12504827
Chromosome Location	chr4:21871986-21871987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1040036	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10516402	0.92[CEU][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs10938858	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs12498561	0.89[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap]
rs12503736	0.85[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs12512316	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642992	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12644852	0.86[EUR][1000 genomes]
rs12650691	0.86[EUR][1000 genomes]
rs1349383	0.88[CEU][hapmap]
rs1398834	1.00[JPT][hapmap]
rs168625	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs16872048	0.80[YRI][hapmap]
rs17569369	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813583	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1827591	0.81[CEU][hapmap]
rs1841185	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs1841186	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs1968778	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2007970	0.88[CEU][hapmap]
rs2007971	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs2044804	0.86[EUR][1000 genomes]
rs2044805	0.86[EUR][1000 genomes]
rs2063656	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063657	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063658	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34833395	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs34903275	0.86[EUR][1000 genomes]
rs4282162	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs4377576	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4563486	0.85[CEU][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap]
rs6840539	0.84[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap]
rs73256549	0.86[EUR][1000 genomes]
rs73256551	0.86[EUR][1000 genomes]
rs73256552	0.86[EUR][1000 genomes]
rs73256555	0.86[EUR][1000 genomes]
rs73256556	0.86[EUR][1000 genomes]
rs73256557	0.86[EUR][1000 genomes]
rs73256558	0.86[EUR][1000 genomes]
rs73256559	0.86[EUR][1000 genomes]
rs73256561	0.86[EUR][1000 genomes]
rs73256595	0.80[EUR][1000 genomes]
rs73256598	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73256601	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73258503	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7375384	0.84[CEU][hapmap]
rs7664617	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs966045	0.85[CEU][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs9994945	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21862600-21875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21871400-21872200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:21871400-21872400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:21871400-21872400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:21871400-21872400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:21871400-21872600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:21871600-21872200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:21871600-21872200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:21871600-21872400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:21871600-21872400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:21871800-21872200	Enhancers	NHEK	skin
12	chr4:21871800-21872400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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