Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1040036	0.92[EUR][1000 genomes]
rs10516402	0.85[EUR][1000 genomes]
rs12504827	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512316	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642992	0.86[EUR][1000 genomes]
rs12644852	0.86[EUR][1000 genomes]
rs12650691	0.86[EUR][1000 genomes]
rs1813583	0.86[EUR][1000 genomes]
rs2044804	0.86[EUR][1000 genomes]
rs2044805	0.86[EUR][1000 genomes]
rs2063656	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063657	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063658	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34903275	0.86[EUR][1000 genomes]
rs73256549	0.86[EUR][1000 genomes]
rs73256551	0.86[EUR][1000 genomes]
rs73256552	0.86[EUR][1000 genomes]
rs73256555	0.86[EUR][1000 genomes]
rs73256556	0.86[EUR][1000 genomes]
rs73256557	0.86[EUR][1000 genomes]
rs73256558	0.86[EUR][1000 genomes]
rs73256559	0.86[EUR][1000 genomes]
rs73256561	0.86[EUR][1000 genomes]
rs73256595	0.80[EUR][1000 genomes]
rs73256598	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73256601	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73258503	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21862600-21875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21871400-21872200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:21871400-21872400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:21871400-21872400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:21871400-21872400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:21871400-21872600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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