Variant report

Variant	rs73258503
Chromosome Location	chr4:21872346-21872347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10033249	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1040036	0.84[AMR][1000 genomes]
rs10938858	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11942219	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11944786	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498561	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12503736	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12504827	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12512316	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12642007	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12642061	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12643557	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12643656	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12649356	0.82[AMR][1000 genomes]
rs12650029	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12650691	0.83[AMR][1000 genomes]
rs1398833	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1398834	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1459277	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1459278	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1459281	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs168625	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17569369	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839523	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1841185	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1841186	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2012445	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2063656	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2063657	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2063658	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28409267	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33939152	0.82[EUR][1000 genomes]
rs34226435	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34580494	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34825575	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34833395	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs360687	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs360688	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs360700	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4377576	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4411977	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4563486	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55777248	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6840539	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73256572	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73256581	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256595	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73256598	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73256601	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs966045	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9760244	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9994945	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21862600-21875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21871400-21872400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:21871400-21872400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:21871400-21872400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:21871400-21872600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:21871600-21872400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:21871600-21872400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:21871800-21872400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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