Variant report

Variant	rs4377576
Chromosome Location	chr4:21825726-21825727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10006785	0.83[EUR][1000 genomes]
rs10012747	0.88[CHB][hapmap]
rs10016234	0.83[EUR][1000 genomes]
rs10017728	0.82[GIH][hapmap]
rs10031539	0.88[CHB][hapmap]
rs10033249	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034603	0.88[CHB][hapmap]
rs10034770	0.82[GIH][hapmap]
rs1040036	0.88[CEU][hapmap]
rs10516402	0.92[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs10938858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942219	0.83[CHB][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944786	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12498561	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12503736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12504827	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs12512316	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs12513218	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12642007	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642061	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642992	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12643557	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12643656	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644852	0.82[EUR][1000 genomes]
rs12646630	0.88[CHB][hapmap]
rs12649356	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12650029	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12650691	0.81[EUR][1000 genomes]
rs13122849	0.82[GIH][hapmap]
rs1349383	0.89[CEU][hapmap]
rs1349384	0.88[CHB][hapmap]
rs1380270	0.88[CHB][hapmap]
rs1398833	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1398834	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1459274	0.88[CHB][hapmap]
rs1459277	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459278	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1459281	0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1513572	0.81[GIH][hapmap]
rs1562815	0.88[CHB][hapmap]
rs168625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498679	0.88[CHB][hapmap]
rs17498715	0.86[CHB][hapmap]
rs1809267	0.88[CHB][hapmap]
rs1813583	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1827591	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[TSI][hapmap]
rs1839523	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841185	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841186	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1968778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs2007970	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs2007971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2012445	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2018175	0.88[CHB][hapmap]
rs2044804	0.82[EUR][1000 genomes]
rs2044805	0.82[EUR][1000 genomes]
rs2063656	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs2063657	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs2063658	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2122592	0.88[CHB][hapmap]
rs2175783	0.82[GIH][hapmap]
rs28409267	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33939152	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34226435	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34384769	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34580494	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34825575	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34833395	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34903275	0.82[EUR][1000 genomes]
rs35609084	0.88[CHB][hapmap]
rs360687	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360688	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360700	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282162	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs4411977	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4563486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4697241	0.82[GIH][hapmap]
rs55777248	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6448069	0.88[CHB][hapmap]
rs6448072	0.88[CHB][hapmap]
rs6448075	0.85[CHB][hapmap]
rs6448093	0.84[CHB][hapmap]
rs6840539	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856781	0.88[CHB][hapmap]
rs715840	0.82[GIH][hapmap]
rs73256549	0.82[EUR][1000 genomes]
rs73256551	0.82[EUR][1000 genomes]
rs73256552	0.82[EUR][1000 genomes]
rs73256555	0.82[EUR][1000 genomes]
rs73256556	0.82[EUR][1000 genomes]
rs73256557	0.82[EUR][1000 genomes]
rs73256558	0.82[EUR][1000 genomes]
rs73256559	0.82[EUR][1000 genomes]
rs73256561	0.82[EUR][1000 genomes]
rs73256572	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256581	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73256595	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256601	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73258503	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7375384	0.92[CEU][hapmap];0.88[CHB][hapmap]
rs7378252	0.88[CHB][hapmap]
rs7664617	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs9291430	0.88[CHB][hapmap]
rs966045	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9760244	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9884923	0.88[CHB][hapmap]
rs9994945	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21821200-21829000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:21825600-21825800	Flanking Active TSS	Ovary	ovary

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