Variant report

Variant	rs12644852
Chromosome Location	chr4:21797801-21797802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21793571..21796261-chr4:21796696..21799237,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10033249	0.85[EUR][1000 genomes]
rs1040036	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10516402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938858	0.85[EUR][1000 genomes]
rs11942219	0.85[EUR][1000 genomes]
rs12503736	0.85[EUR][1000 genomes]
rs12504827	0.86[EUR][1000 genomes]
rs12512316	0.86[EUR][1000 genomes]
rs12642007	0.85[EUR][1000 genomes]
rs12642061	0.85[EUR][1000 genomes]
rs12642992	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643557	0.85[EUR][1000 genomes]
rs12643656	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12650029	0.85[EUR][1000 genomes]
rs12650691	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1349383	0.89[EUR][1000 genomes]
rs1398833	0.83[EUR][1000 genomes]
rs1398834	0.83[EUR][1000 genomes]
rs1459277	0.85[EUR][1000 genomes]
rs1459278	0.85[EUR][1000 genomes]
rs1459281	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs168625	0.85[EUR][1000 genomes]
rs17569369	0.86[EUR][1000 genomes]
rs1813583	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1839523	0.85[EUR][1000 genomes]
rs1841185	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1841186	0.85[EUR][1000 genomes]
rs2012445	0.85[EUR][1000 genomes]
rs2044804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2044805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063656	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063657	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063658	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28409267	0.85[EUR][1000 genomes]
rs33939152	0.83[EUR][1000 genomes]
rs34226435	0.85[EUR][1000 genomes]
rs34580494	0.83[EUR][1000 genomes]
rs34825575	0.84[EUR][1000 genomes]
rs34833395	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34903275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360687	0.85[EUR][1000 genomes]
rs360688	0.85[EUR][1000 genomes]
rs360700	0.85[EUR][1000 genomes]
rs4377576	0.82[EUR][1000 genomes]
rs4411977	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4563486	0.85[EUR][1000 genomes]
rs55777248	0.83[EUR][1000 genomes]
rs73256549	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256551	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256552	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256572	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256581	0.84[EUR][1000 genomes]
rs73256598	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs966045	0.83[EUR][1000 genomes]
rs9994945	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21794600-21803000	Weak transcription	Muscle Satellite Cultured Cells	--

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