Variant report

Variant	rs1040036
Chromosome Location	chr4:21856578-21856579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10516402	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10938858	0.89[CEU][hapmap]
rs11944786	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498561	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12503736	0.88[CEU][hapmap]
rs12504827	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12512316	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12642992	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12644852	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12650691	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1349383	0.92[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs168625	0.89[CEU][hapmap]
rs17569369	0.92[EUR][1000 genomes]
rs1813583	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1827591	0.88[CEU][hapmap]
rs1841185	0.89[CEU][hapmap]
rs1841186	0.89[CEU][hapmap]
rs1968778	0.88[CEU][hapmap]
rs2007970	0.92[CEU][hapmap]
rs2007971	0.92[CEU][hapmap]
rs2044804	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2044805	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2063656	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2063657	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2063658	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34833395	0.88[CEU][hapmap]
rs34903275	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4282162	0.84[CEU][hapmap]
rs4377576	0.88[CEU][hapmap]
rs4563486	0.88[CEU][hapmap]
rs6840539	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs73256549	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256551	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256552	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256555	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256556	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256557	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256558	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256559	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256561	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256595	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73256598	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73256601	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73258503	0.84[AMR][1000 genomes]
rs7375384	0.88[CEU][hapmap]
rs7664617	0.92[CEU][hapmap]
rs966045	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs9994945	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21854000-21859600	Weak transcription	Ovary	ovary

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